INDEXER

TODO: 1. Create a tagging system for combining atoms into molecules. 2. Add prompts to pyndex.py to create the index section. 3. Change the way backups are made.

DONE: Write a script that will run on this folder and create or update an MD file with an index with links to all the files in the folder complete And maybe pulls in the first line or some headings as well. It should add the index to a "Contents" section of the folder's README. Maybe documents can have a meta code that means I intend to put an index in a place.

1. List directory and find all .md files except README.md
2. Read the first line of each file and save it as a title
   1. sort them alphabetically
3. Convert that list of titles into a list of links in markdown.
4. Look in the README.md file and find the # Index or # Contents section
   1. delete the old content of that section
   2. replace with the list of links